This course has launched on October 1st, 2018 and is part of the graduate level BMMB 852: Applied Bioinformatics course at Penn State.
Lectures and new recipes will be published on an approximately weekly schedule.
Each lecture in this course covers a specific data analysis protocol with one or more example workflows. The course is a companion to the Learn Bioinformatics in 100 hours course and the Biostar Handbook.
In addition, we have developed a new web service that allows readers to investigate the output of each of these workflows.
To see how each recipe works in practice visit the Bioinformatics Cookbook.
| Lecture | Your Score |
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Recipe 1: What is a Recipe?
What is a recipe, how to use the Recipes website |
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Recipe 2: FASTQ Quality Control
FASTQ quality control |
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Recipe 3: Understanding Sequence Alignments
What is in an alignment |
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Recipe 4: Short Read Aligners
Aligning short reads to reference genomes |
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Recipe 5: Filtering SAM files
How to process alignment files |
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Recipe 6: Visualizing Large Scale Variation
Detecting large-scale variations |
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DRAFT
Recipe 7
todo |
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DRAFT
Recipe 8
todo |
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DRAFT
Recipe 9
todo |
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DRAFT
Recipe 10
todo |